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GrainGenes Marker Report: k03047

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Locus	k03047
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 275.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags35n11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/T SNP structure (UNICODE) = TCAGATGTAAWTAGGTGTTTT Parent 1 SNP sequence = TCAGATGTAAATAGGTGTTTT Parent 2 SNP sequence = TCAGATGTAATTAGGTGTTTT SNP = A/G SNP structure (UNICODE) = CCATACCATCRTCAGTTATCA Parent 1 SNP sequence = CCATACCATCATCAGTTATCA Parent 2 SNP sequence = CCATACCATCGTCAGTTATCA SNP = T/C SNP structure (UNICODE) = CATCGTCTAAYTTGGGGCGGA Parent 1 SNP sequence = CATCGTCTAATTTGGGGCGGA Parent 2 SNP sequence = CATCGTCTAACTTGGGGCGGA SNP structure (UNICODE) = CAGCCTGCAGRTGTGTCCATA Parent 1 SNP sequence = CAGCCTGCAGATGTGTCCATA Parent 2 SNP sequence = CAGCCTGCAGGTGTGTCCATA
Probe for Locus	bags35n11
Locus	k03047
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = zhb0002.1 [Oryza sativa (indica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAAGCCTCGGAACAGACAGA Right 5' - AAACAGGGAATCAGCTGCAA
Sequence	BJ467064
PCR size	411