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GrainGenes Marker Report: k03058

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Locus	k03058
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 277.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags35j22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Cfr13I SNP = A/G SNP structure (UNICODE) = TATTGTTGGGRACCATCTAGT Parent 1 SNP sequence = TATTGTTGGGAACCATCTAGT Parent 2 SNP sequence = TATTGTTGGGGACCATCTAGT Recognized sequence for CAPs locus = GGNCC
Probe for Locus	bags35j22
Locus	k03058
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] dbj BAB01105.1 unnamed protein product [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GGGACAAAGATGATGCACAA Right 5' - AGTTGCTATAGCTTGCGGGA
Sequence	BJ467019
PCR size	471