Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k03063

[Submit comment/correction]

Locus	k03063
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 138.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags33p05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = G/A SNP structure (UNICODE) = AAGACGCCATRTCAGAATAAG Parent 1 SNP sequence = AAGACGCCATGTCAGAATAAG Parent 2 SNP sequence = AAGACGCCATATCAGAATAAG SNP structure (UNICODE) = CAAAATGACCRAACACATGAA Parent 1 SNP sequence = CAAAATGACCGAACACATGAA Parent 2 SNP sequence = CAAAATGACCAAACACATGAA SNP = T/C SNP structure (UNICODE) = TTCGATCACTYCTCAGATCAT Parent 1 SNP sequence = TTCGATCACTTCTCAGATCAT Parent 2 SNP sequence = TTCGATCACTCCTCAGATCAT
Probe for Locus	bags33p05
Locus	k03063
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OJ000114_01.12 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGCCAAACAATTGTCAGCTC Right 5' - AACTGGTTGCACAGTGCTTG
Sequence	BJ466787
PCR size	375