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GrainGenes Marker Report: k03068

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Locus	k03068
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 114.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags35a20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = C/T SNP structure (UNICODE) = CTCATTGTTCYGGTTTCACAG Parent 1 SNP sequence = CTCATTGTTCCGGTTTCACAG Parent 2 SNP sequence = CTCATTGTTCTGGTTTCACAG Recognized sequence for CAPs locus = CCGG
Probe for Locus	bags35a20
Locus	k03068
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0554D10.15 [Oryza sativa (japonica cultivar-group)] dbj BAB39231.1 P0554D10.15 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAACGATGAAATGAAACGCC Right 5' - TTTGTCGACGAGAAGGTTCA
Sequence	BJ466922
PCR size	379