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GrainGenes Marker Report: k03069

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Locus	k03069
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 136.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags35g06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = GTCTCTCCATYAACCTCAATG Parent 1 SNP sequence = GTCTCTCCATCAACCTCAATG Parent 2 SNP sequence = GTCTCTCCATTAACCTCAATG SNP = A/T SNP structure (UNICODE) = GATCCCAGGCWTGGAAGTTGT Parent 1 SNP sequence = GATCCCAGGCATGGAAGTTGT Parent 2 SNP sequence = GATCCCAGGCTTGGAAGTTGT
Probe for Locus	bags35g06
Locus	k03069
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GTACACCCGATGGAGATGCT Right 5' - TCACGACGGTGCACTACTTC
Sequence	BJ466986
PCR size	411