GrainGenes Marker Report: k03071
Locus
k03071
Type
CAPS
Chromosome
4H
Map
Hv-HNxH602-4H 106
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bags35n16
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = C/T SNP structure (UNICODE) = GGAAAATTCTYGATTCATAAA Parent 1 SNP sequence = GGAAAATTCTCGATTCATAAA Parent 2 SNP sequence = GGAAAATTCTTGATTCATAAA Recognized sequence for CAPs locus = TCGA
Probe for Locus
bags35n16
Locus
k03071
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - CCTCAATTATTTCCCGACGA
Right 5' - GCTGCTGCTGTAATGGAACA
Sequence
BJ467067
PCR size
362
GrainGenes Marker Report: k03071
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