Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k03081

[Submit comment/correction]

Locus	k03081
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 142.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags38b16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = T/C SNP structure (UNICODE) = ATTCTCGGTGYGCCGAAGCTT Parent 1 SNP sequence = ATTCTCGGTGTGCCGAAGCTT Parent 2 SNP sequence = ATTCTCGGTGCGCCGAAGCTT Recognized sequence for CAPs locus = GCGC
Probe for Locus	bags38b16
Locus	k03081
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - TACAACAACAATGGGGAGCA Right 5' - TGAACTTGTGTCAGGGACCA
PCR size	358