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GrainGenes Marker Report: k03083

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Locus	k03083
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 199.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags38f23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = C/T SNP structure (UNICODE) = TCAATGATAGYTACTTTCAAG Parent 1 SNP sequence = TCAATGATAGCTACTTTCAAG Parent 2 SNP sequence = TCAATGATAGTTACTTTCAAG Recognized sequence for CAPs locus = AGCT
Probe for Locus	bags38f23
Locus	k03083
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ribosomal Pr 117 [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - ACGAAGGTATCCATGTCGGA Right 5' - GGGAATGAGCTTGGTTTTGA
Sequence	BU978881
PCR size	417