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GrainGenes Marker Report: k03098

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Locus	k03098
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 118.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags37d02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = C/T SNP structure (UNICODE) = CATTCAGGTTYTTTTTGTTCT Parent 1 SNP sequence = CATTCAGGTTCTTTTTGTTCT Parent 2 SNP sequence = CATTCAGGTTTTTTTTGTTCT SNP = G/A SNP structure (UNICODE) = TATTTTCCACRGTAAATGGGA Parent 1 SNP sequence = TATTTTCCACGGTAAATGGGA Parent 2 SNP sequence = TATTTTCCACAGTAAATGGGA SNP = G/C SNP structure (UNICODE) = GAAATGAGTCSAGCGATGGTA Parent 1 SNP sequence = GAAATGAGTCGAGCGATGGTA Parent 2 SNP sequence = GAAATGAGTCCAGCGATGGTA SNP = G/T SNP structure (UNICODE) = ACAAAGATCAKCGGGGAGGAC Parent 1 SNP sequence = ACAAAGATCAGCGGGGAGGAC Parent 2 SNP sequence = ACAAAGATCATCGGGGAGGAC SNP structure (UNICODE) = ATAAGCCACAKCAAAGACAGA Parent 1 SNP sequence = ATAAGCCACAGCAAAGACAGA Parent 2 SNP sequence = ATAAGCCACATCAAAGACAGA
Probe for Locus	bags37d02
Locus	k03098
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative DNA-directed RNA polymerase Iia [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AACTTGAGCAGGTGGAATGG Right 5' - AGGGCTAGCTGACTGGTTCA
Sequence	BJ550110
PCR size	380