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GrainGenes Marker Report: k03111

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Locus	k03111
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 122.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags37e17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DdeI SNP = C/G SNP structure (UNICODE) = GCTTTGCTTASGAACGGATCT Parent 1 SNP sequence = GCTTTGCTTACGAACGGATCT Parent 2 SNP sequence = GCTTTGCTTAGGAACGGATCT Recognized sequence for CAPs locus = CTNAG
Probe for Locus	bags37e17
Locus	k03111
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = glycine-rich protein [Arabidopsis thaliana] gb AAL69514.1 unknown protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AACTTCGAACAAGCCTGGTG Right 5' - CGAACTTCTATCCCTGTGTGC
Sequence	BJ468140
PCR size	390