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GrainGenes Marker Report: k03115

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Locus	k03115
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 30.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags37n23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MseI SNP = A/G SNP structure (UNICODE) = GCCGGCGTTARCAGAGCCAGG Parent 1 SNP sequence = GCCGGCGTTAACAGAGCCAGG Parent 2 SNP sequence = GCCGGCGTTAGCAGAGCCAGG Recognized sequence for CAPs locus = TTAA
Probe for Locus	bags37n23
Locus	k03115
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OJ1714_H10.10 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CGACAGCATTCACATACAAGC Right 5' - TAGTACAGCTATGGCCCCCA
Sequence	BJ468250
PCR size	369