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GrainGenes Marker Report: k03125

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Locus	k03125
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 227.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags37j03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/T SNP structure (UNICODE) = CTAACTTATTWTTGTTACTAA Parent 1 SNP sequence = CTAACTTATTATTGTTACTAA Parent 2 SNP sequence = CTAACTTATTTTTGTTACTAA SNP = A/G SNP structure (UNICODE) = CATCCTGACARAAGAGAGCAA Parent 1 SNP sequence = CATCCTGACAAAAGAGAGCAA Parent 2 SNP sequence = CATCCTGACAGAAGAGAGCAA SNP = C/T SNP structure (UNICODE) = TCAAATAGAGYGTGCAGCTAC Parent 1 SNP sequence = TCAAATAGAGCGTGCAGCTAC Parent 2 SNP sequence = TCAAATAGAGTGTGCAGCTAC SNP structure (UNICODE) = AGCAAAATCARGACAGGCAGT Parent 1 SNP sequence = AGCAAAATCAAGACAGGCAGT Parent 2 SNP sequence = AGCAAAATCAGGACAGGCAGT
Probe for Locus	bags37j03
Locus	k03125
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OsCDPK7 [Oryza sativa (japonica cultivar-group)] emb CAE03753.2 OSJNBa0013K16.2 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACACACGATCGGCGATAAAT Right 5' - GCAGGGGCAACAACTACTTC
Sequence	BJ468191
PCR size	395