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GrainGenes Marker Report: k03126

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Locus	k03126
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags37l11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = C/T SNP structure (UNICODE) = CAGCCATCAAYGCAACAAGTG Parent 1 SNP sequence = CAGCCATCAACGCAACAAGTG Parent 2 SNP sequence = CAGCCATCAATGCAACAAGTG SNP = G/A SNP structure (UNICODE) = TCATACAGTARTGTTTTCAAG Parent 1 SNP sequence = TCATACAGTAGTGTTTTCAAG Parent 2 SNP sequence = TCATACAGTAATGTTTTCAAG SNP structure (UNICODE) = AACTTCATATRATCGCAAGGT Parent 1 SNP sequence = AACTTCATATGATCGCAAGGT Parent 2 SNP sequence = AACTTCATATAATCGCAAGGT
Probe for Locus	bags37l11
Locus	k03126
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 26S proteasome RPT6a subunit [Dactylis glomerata]
Type	PCR
PCR primers	Left 5' - TCTCAACTATGGCAACCCAA Right 5' - ATCACGCAATTGAGCCTTTT
Sequence	BJ468223
PCR size	441