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GrainGenes Marker Report: k03141

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Locus	k03141
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 76.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags38c06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/C SNP structure (UNICODE) = TGCTGCAAGCMAATTTCTTTT Parent 1 SNP sequence = TGCTGCAAGCAAATTTCTTTT Parent 2 SNP sequence = TGCTGCAAGCCAATTTCTTTT SNP = T/C SNP structure (UNICODE) = CCCCCTCCTAYTTCTTTGTTT Parent 1 SNP sequence = CCCCCTCCTATTTCTTTGTTT Parent 2 SNP sequence = CCCCCTCCTACTTCTTTGTTT SNP = A/G SNP structure (UNICODE) = GGGAAGCTCARCTGTGGTGGT Parent 1 SNP sequence = GGGAAGCTCAACTGTGGTGGT Parent 2 SNP sequence = GGGAAGCTCAGCTGTGGTGGT
Probe for Locus	bags38c06
Locus	k03141
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] gb AAG51825.1 unknown protein; 84864-87548 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ACAAAATTTTATGCGGCTGG Right 5' - ATTTGTGCAGTCCGCCTTAC
Sequence	BJ468307
PCR size	365