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GrainGenes Marker Report: k03165

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Locus	k03165
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 80.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags38c19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = C/T SNP structure (UNICODE) = AGTTAAATTTYTGTGCACAGG Parent 1 SNP sequence = AGTTAAATTTCTGTGCACAGG Parent 2 SNP sequence = AGTTAAATTTTTGTGCACAGG SNP = T/G SNP structure (UNICODE) = CGCTGTGGGAKCAGTTAAATT Parent 1 SNP sequence = CGCTGTGGGATCAGTTAAATT Parent 2 SNP sequence = CGCTGTGGGAGCAGTTAAATT SNP = A/G SNP structure (UNICODE) = GCCAAGAGTGRCACTCGACAA Parent 1 SNP sequence = GCCAAGAGTGACACTCGACAA Parent 2 SNP sequence = GCCAAGAGTGGCACTCGACAA SNP structure (UNICODE) = GCTATATTGGKGCTGACTATC Parent 1 SNP sequence = GCTATATTGGTGCTGACTATC Parent 2 SNP sequence = GCTATATTGGGGCTGACTATC
Probe for Locus	bags38c19
Locus	k03165
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative GEKO1 [Oryza sativa (japonica cultivar-group)] dbj BAD03648.1 putative GEKO1 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCCCTATCCAAAGAAAACAGC Right 5' - AAGGTGCTTCAGATGAGCGT
Sequence	BJ468314
PCR size	369