GrainGenes Marker Report: k03177
Locus
k03177
Type
CAPS
Chromosome
7H
Map
Hv-HNxH602-7H 132.1
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bags39l20
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = T/C SNP structure (UNICODE) = TGTCCTGAGTYGCAGCCCTTG Parent 1 SNP sequence = TGTCCTGAGTTGCAGCCCTTG Parent 2 SNP sequence = TGTCCTGAGTCGCAGCCCTTG Recognized sequence for CAPs locus = GANTC
Probe for Locus
bags39l20
Locus
k03177
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = DegP protease, putative [Arabidopsis thaliana] dbj BAB10901.1 serine protease-like protein [Arabidopsis thaliana]
Type
PCR
PCR primers
Left 5' - TACTACCGGCATTCTTTGCC
Right 5' - ATCTTCCTCAAGGTCGGCTT
Sequence
BJ468661
PCR size
403
GrainGenes Marker Report: k03177
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