GrainGenes Marker Report: k03199
Locus
k03199
Type
CAPS
Chromosome
6H
Map
Hv-HNxH602-6H 112.2
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bags39h18
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BspT104I SNP = T/C SNP structure (UNICODE) = TTTACCTGTTYGAATTTGCAA Parent 1 SNP sequence = TTTACCTGTTTGAATTTGCAA Parent 2 SNP sequence = TTTACCTGTTCGAATTTGCAA Recognized sequence for CAPs locus = TTCGAA
Probe for Locus
bags39h18
Locus
k03199
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative protein [Oryza sativa]
Type
PCR
PCR primers
Left 5' - CACACGAGTCTGGATTCAGGTA
Right 5' - GGGACTCGCATGTTCCTATC
Sequence
BJ468596
PCR size
394
GrainGenes Marker Report: k03199
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