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GrainGenes Marker Report: k03202

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Locus	k03202
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 43.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags39o04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = G/A SNP structure (UNICODE) = CATTGTATCARCATCTCGGAT Parent 1 SNP sequence = CATTGTATCAGCATCTCGGAT Parent 2 SNP sequence = CATTGTATCAACATCTCGGAT SNP structure (UNICODE) = GGGGGTCCTCRACGACGTCCT Parent 1 SNP sequence = GGGGGTCCTCGACGACGTCCT Parent 2 SNP sequence = GGGGGTCCTCAACGACGTCCT SNP = C/T SNP structure (UNICODE) = AATAAGGCTTYCGTAGACACC Parent 1 SNP sequence = AATAAGGCTTCCGTAGACACC Parent 2 SNP sequence = AATAAGGCTTTCGTAGACACC SNP = A/G SNP structure (UNICODE) = GTCAATTGACRGCGCCCCCTC Parent 1 SNP sequence = GTCAATTGACAGCGCCCCCTC Parent 2 SNP sequence = GTCAATTGACGGCGCCCCCTC
Probe for Locus	bags39o04
Locus	k03202
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0072K14.5 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACAAGACAAACAAGGGCTGG Right 5' - TACGTGTTGATGGTGGTGCT
Sequence	CA015687
PCR size	420