Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k03218

[Submit comment/correction]

Locus	k03218
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 180.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags38n23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = T/C SNP structure (UNICODE) = ACGCAAATGCYATCGCCAATT Parent 1 SNP sequence = ACGCAAATGCTATCGCCAATT Parent 2 SNP sequence = ACGCAAATGCCATCGCCAATT SNP = C/T SNP structure (UNICODE) = ACTGATGCACYTGACCCTTAA Parent 1 SNP sequence = ACTGATGCACCTGACCCTTAA Parent 2 SNP sequence = ACTGATGCACTTGACCCTTAA SNP = C/G SNP structure (UNICODE) = AATCTCTCGASCAGTGACCTG Parent 1 SNP sequence = AATCTCTCGACCAGTGACCTG Parent 2 SNP sequence = AATCTCTCGAGCAGTGACCTG SNP = G/A SNP structure (UNICODE) = GCCTTGGATGRGATTTATCTC Parent 1 SNP sequence = GCCTTGGATGGGATTTATCTC Parent 2 SNP sequence = GCCTTGGATGAGATTTATCTC SNP structure (UNICODE) = AGGAACTCCTYCAGGTAAGCT Parent 1 SNP sequence = AGGAACTCCTCCAGGTAAGCT Parent 2 SNP sequence = AGGAACTCCTTCAGGTAAGCT
Probe for Locus	bags38n23
Locus	k03218
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ACCAATGTGACAACGATGGA Right 5' - CTGTGGTAGGGGATTGTGCT
PCR size	411