Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k03229

[Submit comment/correction]

Locus	k03229
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 152.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags38m06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = G/A SNP structure (UNICODE) = AGCATGTATCRATGCAGCACA Parent 1 SNP sequence = AGCATGTATCGATGCAGCACA Parent 2 SNP sequence = AGCATGTATCAATGCAGCACA SNP = T/C SNP structure (UNICODE) = CATGGTGGTTYACACTTAGAT Parent 1 SNP sequence = CATGGTGGTTTACACTTAGAT Parent 2 SNP sequence = CATGGTGGTTCACACTTAGAT SNP = A/G SNP structure (UNICODE) = TATGAAACATRGGATATACAT Parent 1 SNP sequence = TATGAAACATAGGATATACAT Parent 2 SNP sequence = TATGAAACATGGGATATACAT SNP = T/A SNP structure (UNICODE) = AGAGAATGTCWTAGTGACCAG Parent 1 SNP sequence = AGAGAATGTCTTAGTGACCAG Parent 2 SNP sequence = AGAGAATGTCATAGTGACCAG
Probe for Locus	bags38m06
Locus	k03229
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative ubiquitin-specific protease otubain 1 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AACGAATGACAAAATGGGGA Right 5' - GTGACTGCTGAGCTGACTGC
Sequence	BJ468425
PCR size	372