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GrainGenes Marker Report: k03235

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Locus	k03235
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 89.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags39i20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = C/T SNP structure (UNICODE) = GGTTGTCAGAYTCGTGCACCT Parent 1 SNP sequence = GGTTGTCAGACTCGTGCACCT Parent 2 SNP sequence = GGTTGTCAGATTCGTGCACCT SNP structure (UNICODE) = TCTGGCACGGYCAAGGGGAAC Parent 1 SNP sequence = TCTGGCACGGCCAAGGGGAAC Parent 2 SNP sequence = TCTGGCACGGTCAAGGGGAAC SNP = G/T SNP structure (UNICODE) = AGGGGAACTCKAACTCTTGAT Parent 1 SNP sequence = AGGGGAACTCGAACTCTTGAT Parent 2 SNP sequence = AGGGGAACTCTAACTCTTGAT
Probe for Locus	bags39i20
Locus	k03235
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = phospholipase C [Vigna radiata]
Type	PCR
PCR primers	Left 5' - TTTAGGCTTTTGGGCAGAGA Right 5' - AACGCCAAGAAAGTGGAGAA
Sequence	BJ468616
PCR size	358