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GrainGenes Marker Report: k03236

Locus	k03236
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 27.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags39l05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = T/G SNP structure (UNICODE) = ACTGCGAGGAKCTTAGCAGTA Parent 1 SNP sequence = ACTGCGAGGATCTTAGCAGTA Parent 2 SNP sequence = ACTGCGAGGAGCTTAGCAGTA SNP = G/T SNP structure (UNICODE) = CTGATAGATAKGGAGTTTACC Parent 1 SNP sequence = CTGATAGATAGGGAGTTTACC Parent 2 SNP sequence = CTGATAGATATGGAGTTTACC SNP = G/A SNP structure (UNICODE) = CAAGCAAACARCCAATGGTCA Parent 1 SNP sequence = CAAGCAAACAGCCAATGGTCA Parent 2 SNP sequence = CAAGCAAACAACCAATGGTCA SNP = C/T SNP structure (UNICODE) = AGCAGAAAAAYAATGTTTAAT Parent 1 SNP sequence = AGCAGAAAAACAATGTTTAAT Parent 2 SNP sequence = AGCAGAAAAATAATGTTTAAT
Probe for Locus	bags39l05
Locus	k03236
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0005N02.3 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACGACTGACCCTCCTCTTCA Right 5' - CTCGTCGTGGAAATTGTCAG
Sequence	BJ468650
PCR size	371