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GrainGenes Marker Report: k03237

Locus	k03237
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 223.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags39m22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = EcoRV SNP = C/G SNP structure (UNICODE) = CGGACGATATSAGCTAGCTAG Parent 1 SNP sequence = CGGACGATATCAGCTAGCTAG Parent 2 SNP sequence = CGGACGATATGAGCTAGCTAG Recognized sequence for CAPs locus = GATATC
Probe for Locus	bags39m22
Locus	k03237
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative metallophosphatase [Lupinus luteus]
Type	PCR
PCR primers	Left 5' - AACGAGTGTAACAGTGGGGC Right 5' - AACTGATGCTGTGCAACCTG
Sequence	BJ548214
PCR size	425