Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k03243

[Submit comment/correction]

Locus	k03243
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 207.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags39a24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TspRI SNP = G/A SNP structure (UNICODE) = AGAGAACATCRGTGATGCTCT Parent 1 SNP sequence = AGAGAACATCGGTGATGCTCT Parent 2 SNP sequence = AGAGAACATCAGTGATGCTCT Recognized sequence for CAPs locus = CASTGNN
Probe for Locus	bags39a24
Locus	k03243
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = signal peptidase, putative [Arabidopsis thaliana] pir E86203 probable signal peptidase [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - CATTTTGCTGAGGCAGTGAA Right 5' - GGTGCTTCGAGAAGAAGGTG
Sequence	AV936631
PCR size	468