GrainGenes Marker Report: k03245
Locus
k03245
Type
CAPS
Chromosome
5H
Map
Hv-HNxH602-5H 200.1
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bags39e22
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MseI SNP = T/C SNP structure (UNICODE) = CGAATGGCTTYAACGACCTTA Parent 1 SNP sequence = CGAATGGCTTTAACGACCTTA Parent 2 SNP sequence = CGAATGGCTTCAACGACCTTA Recognized sequence for CAPs locus = TTAA
Probe for Locus
bags39e22
Locus
k03245
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = pyruvate dehydrogenase E1 beta subunit [Picea mariana]
Type
PCR
PCR primers
Left 5' - ACCTGCACCGTAGAATCACC
Right 5' - TCCAAACTGTTCGTAGTGCG
Sequence
BJ468552
PCR size
403
GrainGenes Marker Report: k03245
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