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GrainGenes Marker Report: k03274

Locus	k03274
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 104.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags5f11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/C SNP structure (UNICODE) = TACCTGGCTTMATGATCTCAG Parent 1 SNP sequence = TACCTGGCTTAATGATCTCAG Parent 2 SNP sequence = TACCTGGCTTCATGATCTCAG SNP = G/A SNP structure (UNICODE) = TGCCCTCGTCRGCGTTAATCA Parent 1 SNP sequence = TGCCCTCGTCGGCGTTAATCA Parent 2 SNP sequence = TGCCCTCGTCAGCGTTAATCA SNP = T/C SNP structure (UNICODE) = TGCTGTCCAGYCACCCCCAAA Parent 1 SNP sequence = TGCTGTCCAGTCACCCCCAAA Parent 2 SNP sequence = TGCTGTCCAGCCACCCCCAAA
Probe for Locus	bags5f11
Locus	k03274
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = predicted protein [Neurospora crassa] gb EAA36479.1 predicted protein [Neurospora crassa]
Type	PCR
PCR primers	Left 5' - TGCTTGCATTGTCAGAGACC Right 5' - CGCCACCGTCTAAACAGTCT
Sequence	AV919281
PCR size	371