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GrainGenes Marker Report: k03281

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Locus	k03281
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 147.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags4e12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = G/C SNP structure (UNICODE) = GGAACTTGCGSAGTTTCAGGA Parent 1 SNP sequence = GGAACTTGCGGAGTTTCAGGA Parent 2 SNP sequence = GGAACTTGCGCAGTTTCAGGA Recognized sequence for CAPs locus = GCGC
Probe for Locus	bags4e12
Locus	k03281
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = inorganic pyrophosphatase family protein [Arabidopsis thaliana] pir T49933 inorganic pyrophosphatase-like protein - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - TTGCAGATGCTGCTGGATTA Right 5' - AAAGGGCAAATTGTGAATGG
Sequence	AV919064
PCR size	433