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GrainGenes Marker Report: k03285

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Locus	k03285
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 242.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags5d10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = A/C SNP structure (UNICODE) = TACCCAGTGAMGCTATAACAA Parent 1 SNP sequence = TACCCAGTGAAGCTATAACAA Parent 2 SNP sequence = TACCCAGTGACGCTATAACAA Recognized sequence for CAPs locus = AGCT
Probe for Locus	bags5d10
Locus	k03285
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0054D14.5 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCAAGTGGCTCATCATCAAA Right 5' - ATACAGGCAAAATTCGGTGC
Sequence	AV919253
PCR size	398