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GrainGenes Marker Report: k03289

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Locus	k03289
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 242.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags3h19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = SacII SNP = T/C SNP structure (UNICODE) = GCGGGCGCCGYGGGTCGAGCG Parent 1 SNP sequence = GCGGGCGCCGTGGGTCGAGCG Parent 2 SNP sequence = GCGGGCGCCGCGGGTCGAGCG Recognized sequence for CAPs locus = CCGCGG
Probe for Locus	bags3h19
Locus	k03289
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Hypothetical protein [Oryza sativa (japonica cultivar-group)] gb AAN60483.1 Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGCTTCTATTTGCAGCCCTT Right 5' - ATGCTCCAGCAGAGTCCAGT
Sequence	AV922291
PCR size	467