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GrainGenes Marker Report: k03349

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Locus	k03349
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 202.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags3k09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TspRI SNP = A/G SNP structure (UNICODE) = TGAACATACARTGAGAGAGCT Parent 1 SNP sequence = TGAACATACAATGAGAGAGCT Parent 2 SNP sequence = TGAACATACAGTGAGAGAGCT Recognized sequence for CAPs locus = CASTGNN
Probe for Locus	bags3k09
Locus	k03349
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] gb AAD39574.1 T10O24.14 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ACAAACATGCACCTGGAACA Right 5' - GGTCAATGTAGTCACCCATCC
Sequence	AV834584
PCR size	350