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GrainGenes Marker Report: k03359

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Locus	k03359
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 217.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags5p01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/G SNP structure (UNICODE) = CTGGAGATCARCAGTAAGTAT Parent 1 SNP sequence = CTGGAGATCAACAGTAAGTAT Parent 2 SNP sequence = CTGGAGATCAGCAGTAAGTAT SNP = G/A SNP structure (UNICODE) = AGATATCTGTRTTCTTGACAT Parent 1 SNP sequence = AGATATCTGTGTTCTTGACAT Parent 2 SNP sequence = AGATATCTGTATTCTTGACAT SNP structure (UNICODE) = AGTTTTTTCARGAGCTGCGAC Parent 1 SNP sequence = AGTTTTTTCAAGAGCTGCGAC Parent 2 SNP sequence = AGTTTTTTCAGGAGCTGCGAC SNP = C/A SNP structure (UNICODE) = TGGAAGTTCAMATCAAGGACA Parent 1 SNP sequence = TGGAAGTTCACATCAAGGACA Parent 2 SNP sequence = TGGAAGTTCAAATCAAGGACA
Probe for Locus	bags5p01
Locus	k03359
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] pir T01366 hypothetical protein At2g34690 [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - ACAGTTCCAGCAACCTGGTC Right 5' - CGAGTTCGTCAAGGCCTACT
Sequence	AV919414
PCR size	385