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GrainGenes Marker Report: k03369

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Locus	k03369
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 274
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags7h14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = C/G SNP structure (UNICODE) = TTGTTCATTASTTAATTGTTA Parent 1 SNP sequence = TTGTTCATTACTTAATTGTTA Parent 2 SNP sequence = TTGTTCATTAGTTAATTGTTA SNP = A/C SNP structure (UNICODE) = CCACGGCCGGMAGTGGCCGAT Parent 1 SNP sequence = CCACGGCCGGAAGTGGCCGAT Parent 2 SNP sequence = CCACGGCCGGCAGTGGCCGAT SNP = G/A SNP structure (UNICODE) = ACTGTGGGACRATGCCCTCCT Parent 1 SNP sequence = ACTGTGGGACGATGCCCTCCT Parent 2 SNP sequence = ACTGTGGGACAATGCCCTCCT SNP = A/G SNP structure (UNICODE) = ATTGAGGGGGRAAACGATCCG Parent 1 SNP sequence = ATTGAGGGGGAAAACGATCCG Parent 2 SNP sequence = ATTGAGGGGGGAAACGATCCG SNP = G/C SNP structure (UNICODE) = GTATGGCCGCSCCACTCGACG Parent 1 SNP sequence = GTATGGCCGCGCCACTCGACG Parent 2 SNP sequence = GTATGGCCGCCCCACTCGACG
Probe for Locus	bags7h14
Locus	k03369
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative galactose kinase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATTCTTGCTCACGAACCGAT Right 5' - CAGCAGCAGCATTTGTTGAC
PCR size	400