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GrainGenes Marker Report: k03371

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Locus	k03371
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 184.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags8a14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DdeI SNP = C/A SNP structure (UNICODE) = CTGCGAGCTCMGAAGATGTTG Parent 1 SNP sequence = CTGCGAGCTCCGAAGATGTTG Parent 2 SNP sequence = CTGCGAGCTCAGAAGATGTTG Recognized sequence for CAPs locus = CTNAG
Probe for Locus	bags8a14
Locus	k03371
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Putative glycosyl transferase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GTAGCGCTATGCGTTCTTCC Right 5' - AGAGTGAAACAATGGGTGCC
Sequence	AV914774
PCR size	465