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GrainGenes Marker Report: k03421

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Locus	k03421
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 127.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags6e22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/T SNP structure (UNICODE) = ACCTGGAGACWACATAGATTA Parent 1 SNP sequence = ACCTGGAGACAACATAGATTA Parent 2 SNP sequence = ACCTGGAGACTACATAGATTA SNP = A/C SNP structure (UNICODE) = AGATATCTAAMACCTGGAGAC Parent 1 SNP sequence = AGATATCTAAAACCTGGAGAC Parent 2 SNP sequence = AGATATCTAACACCTGGAGAC SNP = T/G SNP structure (UNICODE) = TTTCTCATTAKCTGCAAAAAA Parent 1 SNP sequence = TTTCTCATTATCTGCAAAAAA Parent 2 SNP sequence = TTTCTCATTAGCTGCAAAAAA
Probe for Locus	bags6e22
Locus	k03421
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0014K08.23 [Oryza sativa (japonica cultivar-group)] dbj BAC05596.1 OSJNBa0014K08.23 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGCCCACACTGTACCCAAAG Right 5' - GACAGAGGAGATACCAGCGG
Sequence	AV919704
PCR size	372