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GrainGenes Marker Report: k03426

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Locus	k03426
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 127.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags7b06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 17 ] Restriction enzyme used for CAPS analysis = DdeI SNP = T/G SNP structure (UNICODE) = ATATTTCTGGKTCATGGATTT Parent 1 SNP sequence = ATATTTCTGGTTCATGGATTT Parent 2 SNP sequence = ATATTTCTGGGTCATGGATTT Recognized sequence for CAPs locus = CTNAG SNP structure (UNICODE) = GGTCGGGGCCKGGCTGGCTAT Parent 1 SNP sequence = GGTCGGGGCCTGGCTGGCTAT Parent 2 SNP sequence = GGTCGGGGCCGGGCTGGCTAT SNP = G/A SNP structure (UNICODE) = TGGCTATCGARCTCCGGCGAC Parent 1 SNP sequence = TGGCTATCGAGCTCCGGCGAC Parent 2 SNP sequence = TGGCTATCGAACTCCGGCGAC SNP = A/T SNP structure (UNICODE) = AGCATGTGCTWGAAATGCCGG Parent 1 SNP sequence = AGCATGTGCTAGAAATGCCGG Parent 2 SNP sequence = AGCATGTGCTTGAAATGCCGG
Probe for Locus	bags7b06
Locus	k03426
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = kinesin heavy chain [Zea mays]
Type	PCR
PCR primers	Left 5' - CGTGAAAATGAAAGGCCACT Right 5' - GTGACCTACGAGGTTCCCAA
Sequence	AV919668
PCR size	460