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GrainGenes Marker Report: k03438

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Locus	k03438
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 196.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags7b10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = T/C SNP structure (UNICODE) = GAGATTCTTGYGATCCCCTCT Parent 1 SNP sequence = GAGATTCTTGTGATCCCCTCT Parent 2 SNP sequence = GAGATTCTTGCGATCCCCTCT SNP = A/G SNP structure (UNICODE) = TGATTAAACARAATATCAGTA Parent 1 SNP sequence = TGATTAAACAAAATATCAGTA Parent 2 SNP sequence = TGATTAAACAGAATATCAGTA SNP structure (UNICODE) = AAAGTTTCCAYAATAACAACA Parent 1 SNP sequence = AAAGTTTCCATAATAACAACA Parent 2 SNP sequence = AAAGTTTCCACAATAACAACA SNP structure (UNICODE) = TCTACAAAGTYCACTATCCAT Parent 1 SNP sequence = TCTACAAAGTTCACTATCCAT Parent 2 SNP sequence = TCTACAAAGTCCACTATCCAT SNP = C/A SNP structure (UNICODE) = GTGGCTAATCMCTAATCCTGC Parent 1 SNP sequence = GTGGCTAATCCCTAATCCTGC Parent 2 SNP sequence = GTGGCTAATCACTAATCCTGC
Probe for Locus	bags7b10
Locus	k03438
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)] gb AAS07127.1 putative Rhomboid family protein (with alternative splicing) [Oryza
Type	PCR
PCR primers	Left 5' - TGCAATCGATCTCGACAAAA Right 5' - CTGGTGCACTGGTCTTAGCA
Sequence	AV834213
PCR size	385