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GrainGenes Marker Report: k03444

Locus	k03444
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 237.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags9a01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = G/A SNP structure (UNICODE) = CGAGCCCGGCRTACTGCACGA Parent 1 SNP sequence = CGAGCCCGGCGTACTGCACGA Parent 2 SNP sequence = CGAGCCCGGCATACTGCACGA Recognized sequence for CAPs locus = GTAC
Probe for Locus	bags9a01
Locus	k03444
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = phosphatidic acid phosphatase family protein / PAP2 family protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CGTGTATAGCAATAGGGAGCG Right 5' - CATGATCCACCGGCATTAC
Sequence	AV920027
PCR size	356