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GrainGenes Marker Report: k03461

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Locus	k03461
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 179.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags9k13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = A/G SNP structure (UNICODE) = AGGAGCAGGCRCGAGAACGTT Parent 1 SNP sequence = AGGAGCAGGCACGAGAACGTT Parent 2 SNP sequence = AGGAGCAGGCGCGAGAACGTT Recognized sequence for CAPs locus = GCGC
Probe for Locus	bags9k13
Locus	k03461
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT,
Type	PCR
PCR primers	Left 5' - TAGGGTAGGGTTGTGCCAAG Right 5' - GCAACCACATTTCCGCTACT
Sequence	AV920189
PCR size	360