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GrainGenes Marker Report: k03470

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Locus	k03470
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 280.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags9d11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 36 ] SNP = C/T SNP structure (UNICODE) = ACAATCATCAYATATGAGTGG Parent 1 SNP sequence = ACAATCATCACATATGAGTGG Parent 2 SNP sequence = ACAATCATCATATATGAGTGG SNP = T/G SNP structure (UNICODE) = GGGCCCATAGKTAACCCAACT Parent 1 SNP sequence = GGGCCCATAGTTAACCCAACT Parent 2 SNP sequence = GGGCCCATAGGTAACCCAACT SNP = G/C SNP structure (UNICODE) = CTAAGTTGTTSTATAGGCATC Parent 1 SNP sequence = CTAAGTTGTTGTATAGGCATC Parent 2 SNP sequence = CTAAGTTGTTCTATAGGCATC SNP = T/C SNP structure (UNICODE) = TAACCCAACTYCTTGGGGGAA Parent 1 SNP sequence = TAACCCAACTTCTTGGGGGAA Parent 2 SNP sequence = TAACCCAACTCCTTGGGGGAA SNP structure (UNICODE) = TGTTCCATATYTGATCGATGA Parent 1 SNP sequence = TGTTCCATATTTGATCGATGA Parent 2 SNP sequence = TGTTCCATATCTGATCGATGA SNP = G/A SNP structure (UNICODE) = GTTTTGCCGCRCGATATAGTG Parent 1 SNP sequence = GTTTTGCCGCGCGATATAGTG Parent 2 SNP sequence = GTTTTGCCGCACGATATAGTG SNP structure (UNICODE) = GTAATAAATTRAATGCTCTTC Parent 1 SNP sequence = GTAATAAATTGAATGCTCTTC Parent 2 SNP sequence = GTAATAAATTAAATGCTCTTC SNP structure (UNICODE) = TGTCTTAATTRTTAGTCTTCA Parent 1 SNP sequence = TGTCTTAATTGTTAGTCTTCA Parent 2 SNP sequence = TGTCTTAATTATTAGTCTTCA SNP = T/A SNP structure (UNICODE) = AAACTAAAACWTACCTGTGGG Parent 1 SNP sequence = AAACTAAAACTTACCTGTGGG Parent 2 SNP sequence = AAACTAAAACATACCTGTGGG SNP structure (UNICODE) = ATTTCAGCCTRTTAAAAAACC Parent 1 SNP sequence = ATTTCAGCCTGTTAAAAAACC Parent 2 SNP sequence = ATTTCAGCCTATTAAAAAACC
Probe for Locus	bags9d11
Locus	k03470
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = beta-amyrin synthase [Avena strigosa]
Type	PCR
PCR primers	Left 5' - AAAAAGTGGAGTGCTGCCAT Right 5' - GCCATGGATCTTCTTCAAGG
Sequence	AV920084
PCR size	371