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GrainGenes Marker Report: k03473

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Locus	k03473
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 75.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags9k18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/A SNP structure (UNICODE) = TCATATGGCARCTCTGTGAGG Parent 1 SNP sequence = TCATATGGCAGCTCTGTGAGG Parent 2 SNP sequence = TCATATGGCAACTCTGTGAGG SNP = A/G SNP structure (UNICODE) = TTTCCTCATCRCACACGACGT Parent 1 SNP sequence = TTTCCTCATCACACACGACGT Parent 2 SNP sequence = TTTCCTCATCGCACACGACGT SNP = A/C SNP structure (UNICODE) = TGCATACCGAMGGTGGAAGCT Parent 1 SNP sequence = TGCATACCGAAGGTGGAAGCT Parent 2 SNP sequence = TGCATACCGACGGTGGAAGCT
Probe for Locus	bags9k18
Locus	k03473
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GCAGATCCACGAGATCAAGG Right 5' - GACGCTGCTTAACCCAACAT
Sequence	AV920193
PCR size	489