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GrainGenes Marker Report: k03480

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Locus	k03480
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 99
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah11k22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BcnI SNP = T/G SNP structure (UNICODE) = TTATCTTTCCKGGGGTAACCA Parent 1 SNP sequence = TTATCTTTCCTGGGGTAACCA Parent 2 SNP sequence = TTATCTTTCCGGGGGTAACCA Recognized sequence for CAPs locus = CCSGG
Probe for Locus	bah11k22
Locus	k03480
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = triose phosphate translocator [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - CTGCAACATTGTCAGTTCGG Right 5' - TAGTAGTCCTGGGTCCGTGG
Sequence	BJ552132
PCR size	354