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GrainGenes Marker Report: k03483

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Locus	k03483
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 217.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags9g08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/G SNP structure (UNICODE) = CAAATATATGKGATTGATGCA Parent 1 SNP sequence = CAAATATATGTGATTGATGCA Parent 2 SNP sequence = CAAATATATGGGATTGATGCA SNP = C/A SNP structure (UNICODE) = TGAAGATGCAMATATTACTAA Parent 1 SNP sequence = TGAAGATGCACATATTACTAA Parent 2 SNP sequence = TGAAGATGCAAATATTACTAA SNP = G/A SNP structure (UNICODE) = GGGAAAGAGCRGCCAAAAGTT Parent 1 SNP sequence = GGGAAAGAGCGGCCAAAAGTT Parent 2 SNP sequence = GGGAAAGAGCAGCCAAAAGTT
Probe for Locus	bags9g08
Locus	k03483
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative ribosomal protein S12 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGAAGCTACAGCAGGCACTC Right 5' - GGGCACTCAGTTTCCTCAAG
Sequence	CA015729
PCR size	384