Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k03489

[Submit comment/correction]

Locus	k03489
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 217.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah11e02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/C SNP structure (UNICODE) = CGGGGAAAACMACCGTGAAGT Parent 1 SNP sequence = CGGGGAAAACAACCGTGAAGT Parent 2 SNP sequence = CGGGGAAAACCACCGTGAAGT SNP = G/A SNP structure (UNICODE) = AGAGGTCGTCRGCCTTCCGCT Parent 1 SNP sequence = AGAGGTCGTCGGCCTTCCGCT Parent 2 SNP sequence = AGAGGTCGTCAGCCTTCCGCT SNP structure (UNICODE) = CACTGGTCCARGCTCAGCGAG Parent 1 SNP sequence = CACTGGTCCAGGCTCAGCGAG Parent 2 SNP sequence = CACTGGTCCAAGCTCAGCGAG SNP = T/C SNP structure (UNICODE) = TCAGTTTGAAYATATACCAAA Parent 1 SNP sequence = TCAGTTTGAATATATACCAAA Parent 2 SNP sequence = TCAGTTTGAACATATACCAAA
Probe for Locus	bah11e02
Locus	k03489
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = DNAJ-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATGTCTTTTCTCCCAACCCC Right 5' - TAAAAGAGTCGCTCCGGCTA
Sequence	AV942259
PCR size	387