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GrainGenes Marker Report: k03509

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Locus	k03509
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 210.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags9l05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 22 ] SNP = A/G SNP structure (UNICODE) = ATACAGAGAARCAAATGATAT Parent 1 SNP sequence = ATACAGAGAAACAAATGATAT Parent 2 SNP sequence = ATACAGAGAAGCAAATGATAT SNP = G/C SNP structure (UNICODE) = GCCTCAGCAGSAGCTCCACCT Parent 1 SNP sequence = GCCTCAGCAGGAGCTCCACCT Parent 2 SNP sequence = GCCTCAGCAGCAGCTCCACCT SNP structure (UNICODE) = CACCAGCAGCRGCACCACCAC Parent 1 SNP sequence = CACCAGCAGCAGCACCACCAC Parent 2 SNP sequence = CACCAGCAGCGGCACCACCAC SNP structure (UNICODE) = CACCACCACCRATCGGACCAG Parent 1 SNP sequence = CACCACCACCAATCGGACCAG Parent 2 SNP sequence = CACCACCACCGATCGGACCAG SNP = T/C SNP structure (UNICODE) = CCACCTGCATYAAGTTTCAGA Parent 1 SNP sequence = CCACCTGCATTAAGTTTCAGA Parent 2 SNP sequence = CCACCTGCATCAAGTTTCAGA SNP = A/C SNP structure (UNICODE) = GTAATGGTCCMTTAGTTCAGC Parent 1 SNP sequence = GTAATGGTCCATTAGTTCAGC Parent 2 SNP sequence = GTAATGGTCCCTTAGTTCAGC
Probe for Locus	bags9l05
Locus	k03509
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unnamed protein product [Oryza sativa (japonica cultivar-group)] dbj BAA92988.1 unnamed protein product [Oryza sativa (japonica cultivar-gr
Type	PCR
PCR primers	Left 5' - AGGAGAGAGATCACCAGGCA Right 5' - GCTTTGCTTATGAACCCACG
Sequence	AV915066
PCR size	400