Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k03521

[Submit comment/correction]

Locus	k03521
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 90.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags9l13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = A/G SNP structure (UNICODE) = ATATGTCCGCRAAAGGCGTTC Parent 1 SNP sequence = ATATGTCCGCAAAAGGCGTTC Parent 2 SNP sequence = ATATGTCCGCGAAAGGCGTTC Recognized sequence for CAPs locus = CGCG
Probe for Locus	bags9l13
Locus	k03521
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = DEAD/DEAH box helicase, putative [Arabidopsis thaliana] pir T45632 helicase homolog F13I12.10 - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - CCATGAAGGTCCCACTTGAT Right 5' - TGCACTCAGCATAGCAGACC
Sequence	AV834289
PCR size	373