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GrainGenes Marker Report: k03549

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Locus	k03549
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 323.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah11e22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/T SNP structure (UNICODE) = CCTGGTTTACYCTGTCATCAT Parent 1 SNP sequence = CCTGGTTTACCCTGTCATCAT Parent 2 SNP sequence = CCTGGTTTACTCTGTCATCAT SNP = C/A SNP structure (UNICODE) = GAATGCCTACMTCGATCGTCT Parent 1 SNP sequence = GAATGCCTACCTCGATCGTCT Parent 2 SNP sequence = GAATGCCTACATCGATCGTCT SNP = A/G SNP structure (UNICODE) = GCGCTTACATRCGGCGCGGCT Parent 1 SNP sequence = GCGCTTACATACGGCGCGGCT Parent 2 SNP sequence = GCGCTTACATGCGGCGCGGCT
Probe for Locus	bah11e22
Locus	k03549
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0034I13.13 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TACACCCAAATGCATGGCTA Right 5' - GAGAACACGCTGATCCACAG
Sequence	AV942270
PCR size	464