GrainGenes Marker Report: k03556
Locus
k03556
Type
CAPS
Chromosome
5H
Map
Hv-HNxH602-5H 216.7
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bah13b13
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = T/C SNP structure (UNICODE) = CAGTTGGACTYGCGCAGAAAT Parent 1 SNP sequence = CAGTTGGACTTGCGCAGAAAT Parent 2 SNP sequence = CAGTTGGACTCGCGCAGAAAT Recognized sequence for CAPs locus = GANTC
Probe for Locus
bah13b13
Locus
k03556
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = amine oxidase-related [Arabidopsis thaliana] gb AAL47449.1 T6H22.19/T6H22.19 [Arabidopsis thaliana]
Type
PCR
PCR primers
Left 5' - ACAAAGAAGGGGCTGTCTGA
Right 5' - CTAGAGCTCGAGGAGGACGA
Sequence
AV835612
PCR size
350
GrainGenes Marker Report: k03556
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