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GrainGenes Marker Report: k03558

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Locus	k03558
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 54.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah13l23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 24 ] SNP = G/T SNP structure (UNICODE) = CCATATGGTAKACAGTATGCC Parent 1 SNP sequence = CCATATGGTAGACAGTATGCC Parent 2 SNP sequence = CCATATGGTATACAGTATGCC SNP = C/T SNP structure (UNICODE) = ATAAAATTTCYGAGAACCCAA Parent 1 SNP sequence = ATAAAATTTCCGAGAACCCAA Parent 2 SNP sequence = ATAAAATTTCTGAGAACCCAA SNP = A/T SNP structure (UNICODE) = TTTCATAAATWCTCTATTCTT Parent 1 SNP sequence = TTTCATAAATACTCTATTCTT Parent 2 SNP sequence = TTTCATAAATTCTCTATTCTT SNP = A/G SNP structure (UNICODE) = TTGTGCATCCRTTTTTTATGT Parent 1 SNP sequence = TTGTGCATCCATTTTTTATGT Parent 2 SNP sequence = TTGTGCATCCGTTTTTTATGT SNP = G/A SNP structure (UNICODE) = TCGAGTTTGCRGATCTCCGTA Parent 1 SNP sequence = TCGAGTTTGCGGATCTCCGTA Parent 2 SNP sequence = TCGAGTTTGCAGATCTCCGTA SNP = T/C SNP structure (UNICODE) = ACCCAAGTAAYCCATATGGTA Parent 1 SNP sequence = ACCCAAGTAATCCATATGGTA Parent 2 SNP sequence = ACCCAAGTAACCCATATGGTA
Probe for Locus	bah13l23
Locus	k03558
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = wall-associated protein kinase [Oryza sativa]
Type	PCR
PCR primers	Left 5' - GTTCCACTATTTCCCAGGCA Right 5' - CTCCGTCAAGGGTATCAAGG
Sequence	AV942752
PCR size	350