GrainGenes Marker Report: k03565
Locus
k03565
Type
CAPS
Chromosome
5H
Map
Hv-HNxH602-5H 136.9
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bah11m18
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AseI SNP = T/A SNP structure (UNICODE) = TGGCACTATTWATCTCTCAGG Parent 1 SNP sequence = TGGCACTATTTATCTCTCAGG Parent 2 SNP sequence = TGGCACTATTAATCTCTCAGG Recognized sequence for CAPs locus = ATTAAT
Probe for Locus
bah11m18
Locus
k03565
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative auxin-independent growth promoter [Arabidopsis thaliana]
Type
PCR
PCR primers
Left 5' - CCCCTCTTCTTCCGTTCATC
Right 5' - GTCAGATGACGAGCCGTAGC
Sequence
AV942390
PCR size
419
GrainGenes Marker Report: k03565
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