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GrainGenes Marker Report: k03636

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Locus	k03636
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 134.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah16a03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = T/C SNP structure (UNICODE) = TTCCCAGCGGYCGCTGCTGCC Parent 1 SNP sequence = TTCCCAGCGGTCGCTGCTGCC Parent 2 SNP sequence = TTCCCAGCGGCCGCTGCTGCC Recognized sequence for CAPs locus = GGCC
Probe for Locus	bah16a03
Locus	k03636
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] dbj BAB10783.1 unnamed protein product [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ACCATGCTTCATCGTCTTCC Right 5' - ATTTCAAACTCCCATGTGCC
Sequence	AV943149
PCR size	427